Current location: Biology > Taxonomy > Software
1. PHYLIP
PHYLIP
http://evolution.genetics.washington.edu/phylip.html - 25-02-2003
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[detailed information]
Rating: [7.00] Votes: [2087]
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3. Component
For analysis of phlyogenies. Includes a wide range of randomisation methods, consensus methods, tree comparison measures, and calculates reconciled trees. Now aging, and availab
http://taxonomy.zoology.gla.ac.uk/rod/cpw.html - 07-09-2002
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[detailed information]
Rating: [6.00] Votes: [156]
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4. GeneTree
Uses reconciled trees to compare gene trees and species trees, explaining incongruence between the phylogenies by postulating horizontal transfer, gene duplication
http://taxonomy.zoology.gla.ac.uk/rod/genetree/genetree.html - 05-07-2002
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[detailed information]
Rating: [6.00] Votes: [1054]
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5. Mesquite
Experimental, modular software for evolutionary biology, designed to help biologists analyze comparative data about organisms.
http://mesquiteproject.org/mesquite/mesquite.html - 26-04-2002
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[detailed information]
Rating: [6.00] Votes: [546]
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6. MrBayes
Bayesian inference of phylogeny using Markov Chain Monte Carlo methods.
http://morphbank.ebc.uu.se/mrbayes/ - 27-05-2001
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[detailed information]
Rating: [6.00] Votes: [651]
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7. PAML
Phylogenetic analyses of DNA or protein sequences using maximum likelihood.
http://abacus.gene.ucl.ac.uk/software/paml.html - 21-06-2003
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[detailed information]
Rating: [6.00] Votes: [1291]
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8. Phylo-Win
Graphical color interface for molecular phylogenetic inference. It performs neighbor-joining, parsimony, and maximum likelihood methods and bootstrap with any of them.
http://pbil.univ-lyon1.fr/software/phylowin.html - 09-12-2002
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[detailed information]
Rating: [6.00] Votes: [930]
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9. Phylodendron
Java application for drawing phylogenetic trees. Allows you to save in various formats, print, edit, modify, and adorn the tree, and should work on any java runtim
http://iubio.bio.indiana.edu/soft/molbio/java/apps/trees/ - 30-12-2001
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[detailed information]
Rating: [6.00] Votes: [112]
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10. RadCon
A package implementing a wide range of consensus methods, including reduced consensus, and for calculation of MRP supertrees. Currently only available for Macs.
http://taxonomy.zoology.gla.ac.uk/~jthorley/radcon/radcon.html - 24-03-2003
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[detailed information]
Rating: [6.00] Votes: [178]
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