Current location: Chemistry > Software > Biomolecular
1. Folding@home
It is a distributed computing project which studies protein folding, misfolding, aggregation, and related diseases.
http://folding.stanford.edu/ - 12-09-2001
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[detailed information]
Rating: [9.00] Votes: [605]
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2. Pande Group
Folding simulations for fusion peptides, proteins and RNA with aim of predicting structure from genome by research at Stanford University, Calfornia.
http://www.stanford.edu/group/pandegroup/ - 29-10-2000
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[detailed information]
Rating: [8.00] Votes: [1788]
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3. AutoDock
A suite of automated docking tools. It is designed to predict how small flexible molecules, such as substrates or drug candidates, bind to a receptor of known 3D structure.
http://www.scripps.edu/pub/olson-web/doc/autodock/ - 28-03-2000
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[detailed information]
Rating: [7.00] Votes: [1083]
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4. EGO
A parallel program for molecular dynamics simulations of biomolecules.
http://www.lrz-muenchen.de/~heller/ego/ - 28-11-2003
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[detailed information]
Rating: [7.00] Votes: [321]
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5. GROMOS
A general-purpose molecular dynamics computer simulation package for the study of biomolecular systems.
http://igc.ethz.ch/gromos/ - 02-05-2003
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[detailed information]
Rating: [7.00] Votes: [1285]
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6. NAMD
A parallel, object-oriented molecular dynamics code designed for high-performance simulation of large biomolecular systems. NAMD is distributed free of charge and includes source code.
http://www.ks.uiuc.edu/Research/namd/ - 29-12-2000
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[detailed information]
Rating: [7.00] Votes: [1313]
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7. SWISS-MODEL
SWISS-MODEL is an Automated Protein Modelling Server running at the GlaxoWellcome Experimental Research in Geneva, Switzerland.
http://www.expasy.ch/swissmod/SWISS-MODEL.html - 06-06-2003
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[detailed information]
Rating: [7.00] Votes: [1980]
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8. TINKER
A free molecular modeling package for molecular mechanics and dynamics, with some special features for biopolymers. Distributed as source code and as binaries for Windows9x, Linux and Mac.
http://dasher.wustl.edu/tinker/ - 16-04-2003
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[detailed information]
Rating: [7.00] Votes: [734]
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9. Bionet.software.x-plor
Archive of newsgroup for X-PLOR software for 3D macromolecular structure determination.
http://www.bio.net/hypermail/X-PLOR/ - 06-04-2000
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[detailed information]
Rating: [6.00] Votes: [725]
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10. CHARMM
A program for macromolecular dynamics and mechanics. It performs standard molecular dynamics in many different ensembles (e.g., NVE, NVT, NPT) using state-of-the-art algorit
http://www.scripps.edu/brooks/charmm_docs/charmm.html - 24-08-2003
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[detailed information]
Rating: [6.00] Votes: [1579]
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